Licalsi tries to plea bargain his case and only get six years in prison for the murder, but Kelly is greatly opposed to the bargain after realizing he's in love with Janice. After learning that Kelly still has feelings for Janice, Robin ends their relationship. Meanwhile, Sipowicz and Kelly go on a stakeout of an apartment complex that have been the target of several robberies.

Licalsi takes the stand during her trial. The Internal Affairs Bureau investigates Kelly and Sipowicz in regards to the arrest of Officer Guyce and Officer Quint. Meanwhile, Kelly, Sipowicz, Medavoy and Martinez investigate the murder of a black couple.

Kelly’s future with the force is decided as he investigates the death of an 18-month old baby shot in a drive-by while riding in a car driven by Duane Rollins. Though everyone believes the act was random, Kelly believes that Rollins was the intended target. Meanwhile, Sipowicz finds the body of a cop, and must continue dealing with both his commitments to Alcoholics Anonymous and his feelings for Sylvia Costas.

Sipowicz and Simone are assigned to the case of a pregnant woman who was murdered and the only charred remnants remain, which means there are few clues for the detectives to go by. Meanwhile, Sipowicz grows increasingly concerned when a close friend, Dan Breen, is badly beaten by his mentally handicapped son, Danny.

Simone and Sipowicz investigate the murder of a gay bar proprietor and have transsexual Candace La Rue as a material witness. Dan Breen decides to visit his mentally disturbed son, Danny, despite Sipowicz warning him not to do so. Elsewhere, Medavoy investigates a fortune telling scam after a woman is conned out of her life savings; and Lt. Fancy’s wife goes into labor.