Li Shanshun is a Chinese student just moving to Japan. Upon moving in his new apartment he meets a woman named Haraguchi. He sees here again that night, after observing the stars, and even saves her from getting caught by the cops. It seems Haraguchi is in something she shouldn't be as Li saves her from being kidnapped after running into her again. But a second rescue is out of the question since the kidnapper is a Contractor. Li is knocked off a bridge and left for dead and Haraguchi is taken away. Is Li really dead? Or is there more than meets the eye when it comes to him?

An Eurasian girl named Suou watches a meteor shower along with her twin brother Shion and their father, but things go awry when a meteor crashes into their location. Two years later, Shion has turned into a contractor from the incident, confined to a wheelchair due to his renumeration. He is locked away into the family home for safekeeping, while Dr. Pavlichenko spends his time researching into his son's condition and the contractors, forbidding Suou to talk or see her brother. Things go normally in their lives until Suou's best friend Tania becomes a contractor and attacks her boyfriend Nika when he stops her from leaving. Hei aka BK-201 reappears in Russia after a FSB squad tries to capture Shion alive; April also reappears in Russia on a mission to secure Shion.

Kirihara has searched long and hard for BK201?s true identity, and what she discovers of his past is shocking, but the impending destruction of Tokyo is foremost on the minds facing off in this final battle.

Suo encounters someone she thought was dead and learns the truth behind the mysteries of her past. Unfortunately, the meeting is cut short when several Contractors launch an attack.

Prophesies are fulfilled, and Suo faces her destiny. Even as her memories fade away beneath the shining moon, hope remains - and a new era begins.