The Sand ninja fight against time to treat Kankuro. Even the Sand’s poison expert, Granny Chiyo, is baffled. The only hope lies with the reinforcements sent by Tsunade.

Teams Kakashi and Guy reach the Akatsuki hideout. They hurry to infiltrate but are thwarted by a five-seal barrier. The only way to break the barrier is to remove all five seals at once.

Although stung with poison herself, Granny Chiyo uses the last of the antidote on Sakura. Mocking the tender scene between Granny Chiyo and Sakura, Sasori attempts to end Granny Chiyo's life.

Naruto, Choji and Shikamaru attempt to capture and interrogate Sai, but Sai withdraws after insulting Naruto. Shortly afterward, Ino appears. Concerned that the demon fox could fall into Akatsuki hands, the village elders challenge Tsunade's plan to send Naruto out of the village without the still bedridden Kakashi. Tsunade promises to protect Konoha with her own life if Naruto is captured, but is still forced to compromise with Danzo by adding Sai to Team Kakashi. She also temporarily replaces Kakashi with ANBU member Yamato and warns him to keep an eye on Sai. Naruto and Sakura finally meet their new team members, and Naruto is immediately angered upon Sai's appearance.

As Team Kakashi continues their search for Sasuke, Naruto suddenly collapses due to his previous fight with Orochimaru. As Naruto wakes up, Sai begins to reveal more about his brother, but Orochimaru suddenly attacks them. Sakura and Yamato come to Naruto's aid against Orochimaru, while Sai continues the search. Just as Sai finds Sasuke, Yamato finds Sai's bingo book with Sasuke listed as a target for assassination.

The temple monks explain that the tombs hold the loyal bodyguards of Fire Country's feudal lord. Naruto observes Sora sparring with other monks and becomes offended upon realizing he is holding back. Naruto challenges Sora, but just as the matter is about to get serious, another monk stops him. Naruto realizes Sora is despised by the other monks as he was himself and wishes to befriend him. Naruto visits Sora again and observes him practicing his wind jutsu in earnest, hoping to get strong enough to avenge his father. They later return to the temple to receive news that another tomb has been robbed.

Konoha's ninja fight off the revived zombie members of the Kohaku clan. The four Guardian Ninjas, Seito, Tōu, Nauma and Kitane, are also revived. Asuma realizes that they are planning to use Limelight, a jutsu in which the four create a lightning blast powerful enough to destroy Konoha. Asuma sends Sakura and Yamato after the other three while he remains behind to battle Kitane, but Fuen tackles Sakura and Fudo fights Yamato. Meanwhile, Naruto catches up to Sora, but Sora runs off in search of Furido. Naruto tries to pursue him, but is assailed by Fuuka. Soon after, Sora reaches Furido, who admits that he had planned to destroy Konoha.

The second stage of Naruto's training continues, while Tsunade sends out twenty teams composed of four ninja each to deal with the Akatsuki members in the Fire Country. Shikamaru leaves with Asuma, Izumo and Kotetsu, whereas Ino and Choji leave with Raido and Aoba. After putting in considerable effort, Naruto clears the second stage of his training, but collapses from hunger and exhaustion almost immediately afterward.

After Sasuke reverses Orochimaru's body-switch with his Sharingan, he releases one of Orochimaru's test subjects, Suigetsu. Determined to put together a team to achieve his goals, he decides to request Suigetsu's assistance. Suigetsu agrees, but only if he's willing make a detour to the Land of Waves first.

The Akatsuki Leader, Pain, begins his invasion of the Hidden Leaf Village. The Leaf ninja assemble to protect Naruto's whereabouts, but when Pain targets Iruka, Kakashi must face off against him.

Naruto successfully begins taking out Pain's bodies one after another, but when his Sage Mode reaches its limit, Pain attempts to take control of the battle. Is the moment of Pain's victory at hand, or does Naruto have a plan?

With Nagato's story done, Naruto tells him his answer, declaring that he won't abandon the legacy of his master, and he'll keep striving for peace no matter what pain he's put through. Nagato reflects on what Naruto says, thinking back to his final days as one of Jiraiya's students. How will Nagato ultimately respond to Naruto's answer?

After hearing the news about Akatsuki's attack on the Hidden Leaf Village, Gaara worries about Naruto's well-being. He remembers a time in the past where Team 7 was assigned to help him out with a problem, and how nobody, especially Naruto, was eager to trust him. Yet, when his life was put in danger by people he had wronged, Naruto was the first to come to his rescue.

Konohamaru's team asks Neji to talk about Naruto's heroism. Instead, Neji tells them about an incident during the Chunin exams three years prior. While Orochimaru attacked Konoha, two rogue ninja take advantage of the commotion and kidnap Hinata. Neji, Tenten, Kiba, and Akamaru rush out to save her. They're in trouble until Hiashi shows up and saves them, telling Neji that he's the beloved memory of Hiashi's younger brother. Neji realizes Naruto's speech about destiny was right; he isn't just a slave to the clan name. Konohamaru's team complains that Naruto wasn't in the story at all, and Neji cryptically answers that Naruto was the most important part.

With Team Hawk exposed, Sasuke begins to ruthlessly take down all opposing samurai. Raikage, along with Darui and Shii, track down Sasuke. The two sides engage in battle, and Suigetsu and Juugo join the fray. Which side will win this battle of overwhelming power?

Sakura ditches her team and goes alone to Sasuke's location. Meanwhile, Madara advises Sasuke to finish off Karin, but at the last second Sakura intervenes. After so long, what interaction will take place between Sasuke and Sakura?

In Mount Myoboku, Gerotora, Fukasaku, and the Great Lord Elder are debating whether to give Naruto the key to the Tetragram Seal left behind by Jiraiya, an act that could unleash the Nine Tails.

Might Guy recalls their "visualization" training with Lee in order to avoid learning the Drunken Fist and forgetting an incident which Might Guy apologizes to the restaurant owner with humiliation. Lee, who is determined to train to be stronger than Naruto, follows Might Guy's orders and resemble animal fighting styles which represent on a restaurant menu. However they failed, until they tried on training on a moving boat. Like Guy who has seasickness, Lee also suffers from seasickness but he uses it to balance the boat which resembles exactly as the Drunken Fist fighting style. Guy lately realizes that Lee is also aware of the restaurant incident and Lee was only protecting Guy from a drunk man which causes the restaurant to be totally damaged.

Tenten remembers when she was little and how she really wanted to become like the legendary Tsunade. She finds out through hard training that she won't be capable of the strength Tsunade has. She also finds out that she won't be suitable to be a medical ninja for her poor chakra control. But at last, she discovers that she has the ability to summon ninja tools, thus creating her own style of fighting.

Sixteen years ago, Fourth Hokage Minato Namikaze and his wife Kushina are expecting their first child, much to the delight of the young couple.

Fourth Great Ninja War is about to begin, ninjas are going through their formations, medical supplies are being checked and restocked. The title of this Naruto Episode is "Assemble Allied Shinobi Forces". The headbands are done. Let's go! Tsuchinage saves Nine Tails and Eight Tails, but Yamato gets captured.

The Allied Shinobi Forces’ commando unit engages with the Akatsuki in the first wave of battle.

As Darui and his First Company engage an army of White Zetsu, the remaining forces must deal with reanimated shinobi.

While training in Chakra Mode, Naruto senses the presence of the Nine Tails’ chakra seeping from Kinkaku outside. Curious to find out what’s happening, Naruto tries to leave the training room when Iruka suddenly steps in to stop him.

Over at the Medical Unit camp, Sakura and the other medic ninja work nonstop to treat the wounded. Neji is there to recover from overusing his Byakugan.

Still coping with the loss of her loved ones, Tsunade indulges in gambling and drinking. Around the same time, the Raikage Ay and his men are on a mission to steal a scroll from a certain village.

Gaara leads the Fourth Company into battle against the previous Kage, including his father, the late Fourth Kazekage. The Fourth Kazekage attacks Gaara in order to determine if his son is truly worthy to be the current Kazekage.

Shikamaru, Neji, Choji, and Kiba succeed in defeating the Sound Ninja Four. But the enemy uses the Underworld Transfer Jutsu to trap the Leaf shinobi’s souls inside a barrier.

Naruto and the others finally regain their lost memories regarding Yota. Years ago, the Leaf Village kids came to befriend Yota, but the adults believed the young boy was a spy and took him away for questioning.

Thanks to Itachi, the Reanimation Jutsu is released, and all the Reanimated Shinobi are returned to their resting places. But to everyone’s surprise, the real Madara still remains!

Obito watches in disbelief as Kakashi kills Rin. Unable to accept the harsh reality, Obito decides to carry out Madara’s dream so that he can create an ideal world where Rin still exists.

Orochimaru is forced to flee the Hidden Leaf after Third Hokage Hiruzen exposes his illegal experiments. Danzo, fearing that Orochimaru’s capture would lead to the exposure of his own involvement in the experiments, sends out one of his men to help.

Itachi Uchiha is inducted into Kakashi’s unit as the youngest member of the ANBU Black Ops. Itachi’s father, Fugaku, is pleased, thinking this will grant the Uchiha access to exclusive, top-secret Leaf intel.

Kakashi desperately tries to reach out to Obito, but his words fall on deaf ears. Obito instead accuses Kakashi of being trash, which angers Naruto, forcing him to step in and defend his Sensei.

The Senju and Uchiha clans join together to build a shinobi village and fulfill their dreams.

Team 7 is finally reunited when Naruto, Sakura and Sasuke join forces.

Obito completely absorbs the giant Ten Tails, undergoes a transformation and becomes the Ten Tails' Jinchuriki.

The Ten Tails morphs into its final form, "The Divine Tree," and attacks the shinobi, absorbing their chakra one after another.

All the Tailed Beasts are freed, and old friends Kakashi and Obito come face to face with each other. What will Obito's response be? Meanwhile, the Tailed Beasts and the Allied Shinobi Forces shift their focus onto their greatest foe, Madara Uchiha. Gaara is reunited with his former Tailed Beast, Shukaku. When Gaara asks Shukaku to lend his power to seal Madara, he refuses. Will their history of animosity prevent them from working together?

When Hinata is labeled unfit as a successor, Hanabi's heart becomes bound to her destiny.

On the night before the Second Exam, the entrants gather in the cafeteria, and a brawl breaks out.

Kiba and his team are in pursuit of Hidden Grass Ninja who have stolen their scroll!

Sakura and her team continue their trek across the desert towards the goal. Their continuous battles have depleted Sakura's chakra, so they stop to rest. Just then, they encounter a puppet manipulated by a rival team from the Sand and end up being discovered.

Neji and the team come across Matsuri collapsed in the desert and find out that Gaara is in danger. Meanwhile, the chains of a mysterious priest bind Gaara and Foo.

Guy releases his Eight Inner Gates against Madara, but the Seventh Gate of Shock does not work against him!

It’s been three years since Naruto set out to train with Jiraiya, and he's just returned to the Hidden Leaf Village. Konohamaru immediately begs Naruto to teach him a new jutsu and he starts to go over the basics...but his explanations are very vague. Soon after, Naruto sets out on a mission, leaving Konohamaru to figure it out alone!

Tenten falls under the Infinite Tsukuyomi and wakes up in the Hidden Leaf Village. When Lee and Guy Sensei appear, Tenten is relieved to see that she is not alone. But her joy is short-lived, as both men act oddly and are dressed stylishly—just where has she been transported to?

Karin is caught within the Infinite Tsukuyomi and dreams of her past. She was born into the Uzumaki Clan and has the unique ability to heal anyone who bites into her. Driven out of her village, the Hidden Grass takes her in, only to use her for this ability. Karin has no choice but to endure constant suffering in order to survive. She is later chosen to enter the Chunin Exams, where Sasuke saves her life. Karin has never forgotten what he did for her—or his smile.

Tsunade continues to read Jiraiya’s novel. Chunin- and jonin-level ninja have gone missing, and the Fourth Hokage, Minato, orders a search mission with teams of genin led by Guy and Kurenai. Kakashi’s Team 7 is also dispatched, but the hero Naruto Uzumaki, despite being the Hokage’s son, has the misfortune of being labeled a loser.

Sasuke and Sakura join up with the others, but the Puppet User appears and blocks their path back to the Hidden Leaf Village. Sasuke wants to bring down the puppets and rush back to report to the Fourth Hokage, but Shikamaru and the others insist on staying and rescuing the jonin.

Naruto’s strength is recognized by his fellow genin, except Sasuke. But while Naruto enjoys a close relationship with his father, Sasuke’s father, Fugaku, constantly compares Sasuke with his older brother Itachi and barely pays attention to him…

Sasuke has left with Orochimaru, but Naruto is not about to give up. Determined to bring Sasuke back, he returns to the village with Shikamaru and the others. Meanwhile, Yahiko appears in the village, calling himself “Pain" and seeking revenge for the Hidden Leaf’s betrayal.

Seeing Hinata almost die triggers Naruto’s anger and he goes into Nine Tails State. Naruto's power is enormous, but Pain releases his jutsu to seal him away. Hatred consumes Naruto as he tries to break the seal. With Naruto unable to calmly control the Nine Tails’ power, the village steadily heads toward destruction.

Itachi becomes a rogue ninja and joins the Akatsuki. He is welcomed and introduced by Pain and Orochimaru as the ex-Leaf ANBU and the man who massacred his entire clan. Itachi is paired up with a man named Juzo, and their first job together is to fulfill an assassination request in the Land of Water.

Kaguya Otsutsuki suddenly emerges from Madara’s body. She is the mother of Hagoromo, the Sage of the Six Paths who entrusted his powers to Naruto and Sasuke. Kaguya’s power is immense and instantly sends Naruto and Sasuke to an alternate dimension. Naruto and Sasuke are the only ones who can seal away Kaguya, but they can’t find a jutsu that works against her!

The Infinite Tsukuyomi does not affect Hashirama, Tobirama, Hiruzen and Minato because they are reanimated. Hagoromo, the Sage of the Six Paths, appears and explains to the four that Hashirama and Madara are the reincarnations of his sons Ashura and Indra. Hagoromo recounts the tale of how he founded Ninshu, the Ninja Creed, and about the lives of Ashura and Indra.

Chakra—whose energy connects this world to those beyond—allows Obito to leave Rin's side for a moment and appear in Kakashi’s inner psyche. Obito gives him his Magekyo Sharingan and leaves with a parting wish that Kakashi become the Sixth Hokage.