Gaara, his strength completely exhausted, is whisked away by Deidara. Kankuro ignores Baki’s efforts to stop him and immediately sets out in pursuit with a platoon to rescue Gaara.

Granny Chiyo and Sakura rescue Naruto from Itachi’s genjutsu. Without a moment’s delay, Kakashi begins a counterattack.

Chiyo and Sakura take cover, and Sasori wastes no time unleashing a ruthless attack.

Sakura hurries to get to Naruto with Granny Chiyo, who is suffering from the poison. The members of Team Guy rush to assist Team Kakashi. Meanwhile, with all preparations complete, Kakashi reveals his Mangekyo Sharingan.

Yamato disguises himself as Sasori after creating a wood replica of Hiruko, and goes to meet the spy. The spy turns out to be Orochimaru's right-hand man, Kabuto Yakushi, who reveals the location of Orochimaru's current hideout to Yamato. Orochimaru interrupts the meeting, appearing to attack Kabuto, and while it initially appears that Orochimaru has come after Kabuto, Kabuto attacks Yamato and reveals that he is truly loyal to Orochimaru. Orochimaru calls out Naruto, Sakura and Sai from where they are hiding and observing the meeting, and prepares to fight the team.

Sai receives a chilling glare from Sasuke's Sharingan that frightens him. Sai gives Orochimaru a bundle with information about Konoha's ANBU. Yamato gives Sakura and Naruto seeds with his chakra that enables him to track them inside the lair, and reveals that he was able to track Sai because he put a seed in Sai's clothing and food during the visit to the hot springs. Kabuto locks Sai in a room, and the boy summons a bingo book from scrolls he carries. Yamato uses a jutsu to open a tunnel into Orochimaru's hideout, and he, Naruto and Sakura travel to Sai's room undetected.

Naruto, Sakura, Sai and Yamato head out for a new mission near the Fire Temple. When the other party fails to show up at the rendezvous point, the team gets separated and Naruto stumbles upon one of the four hidden tombs they came to protect. Due to a misunderstanding, he fights one of the monks-in-training from the Fire Temple, Sora, who also uses wind chakra based techniques. After the confusion, the monks and Team Kakashi travel to the Fire Temple, and Naruto recognizes it from his nightmare.

Asuma supervises Naruto and Sora's wind chakra training, and notices that Sora, like Naruto, has very powerful chakra. Tsunade and Yamato learn from Chiriku that Sora was inadvertently responsible for an incident in which the Temple of Fire was destroyed. Later, Asuma gives Sora a claw made from the same materials as his chakra blades. It is revealed that Asuma killed Sora's father Kazuma, who had planned to kill the Hokage. Furido then approaches Sora, telling him that Asuma is responsible for his father's death and passing him two "king" pieces from a Shogi set for Asuma. Danzo mysteriously disappears. Naruto approaches a furious Sora in the training grounds, who easily throws a chakra-powered kunai through a tree and destroys the stone behind it.

Furido releases Sora's seal, and tells him the truth: Sora is a pseudo-Jinchuuriki. The chakra that had leaked from the Nine Tailed Fox when it attacked Konoha 15 and a half years ago was harvested and implanted into Sora. Just then, Asuma arrives at the scene with Naruto. Asuma recognizes Furido and it is revealed that he is Kazuma, Sora's father. Yamato, Sakura, Kiba, Lee, Ino, Choji and Shikamaru also turn up. Enraged, Sora wants to destroy everything, and turns into the Three-Tailed form of the Nine-tails. However, Yamato is unable to restrain him, because he does not have the First's necklace on him.

Asuma mourns Chiriku's death, and realizes that Hidan and Kakuzu are trying to claim the bounty on his head. Meanwhile, Hidan and Kakuzu take Chiriku in for their payment. Meanwhile, Kakashi shows Naruto what the true goal of his training will be.

Yūkimaru summons the Three-Tailed and immobilizes it while Guren tries to capture it. It manages to break free and attack. Kakashi tells Naruto to investigate the lake, while they find Rinji and the others. Rinji and his men prepare an ambush, but Hinata, Sakura, and Sai arrive to avert it. Naruto summons Gamakichi and Gamatatsu and approach the Three-Tails, where they see Yūkimaru and learn of his allegiance to Guren. Trying to save Guren, Yūkimaru tries to suppress the Three-Tails once more, before managing to escape with her.

Kabuto plans on breaking Leaf’s The Four-Corner Sealing Barrier from the inside by using Yukimaru’s power and have the Three-Tailed Beast go on a rampage.

Having become genin, Jiraiya, Tsunade, and Orochimaru are assigned to the future Third Hokage's platoon. Watching Sarutobi's space/time ninjutsu, Jiraiya becomes absorbed into learning it. One day, Jiraiya loses his way and stumbles upon Myouboku Mountain. There he meets the Great Toad Sage who predicted his arrival. See the origins of the Toad Sage Jiraiya!