When a young boy is executed, Intelligence turn to the boy's parents for information and upon further investigation, discover the father has a criminal background and was a part of a local gang.

Responding to a call about a suspicious duffel bag at the Chicago Lakefront, Voight is horrified to discover that the bag contains the frigid and unmoving body of a newborn baby. Meanwhile, Voight is surprised to hear that his son is in town and Burgess and Roman grow closer.

In the Season 3 finale, the team investigates the murder of a single mom who was in contact with Voight's now-reformed son, who was himself brutally assaulted. Meanwhile, Roman makes a major decision and Crowley plans to make changes within the unit.