Melancholy, unmotivated Kiyotaka Ayanokouji attends his first day at Tokyo Metropoiltan Advanced Nurturing High School, a government-established institution for training a generation of Japan's best and brightest. In this school, it is said, everything is decided based on merit, which includes the generous monthly "point" allowance students can spend at local shops. As Ayanokouji begins navigating this system, he also nurtures curious relationships with aloof fellow outsider Suzune Horikita and the terminally gregarious Kikyou Kushida.

Classrooms analyze their and others test results. Points distribution is late. Three students from 1-C reported Sudo for attacking them.

Even during summer vacation, lone wolf Horikita would rather remain locked in her room studying than interacting with others. One day, Ayanokouji invites her to visit the pool with some of the others.

Survival test is coming to the end. Things don't look well for 1-D. Key card is stolen. And now Suzune is forced to withdraw due to her sickness. Kiyotaka will try to turn things around.