April 2025. While helping his childhood friend Naru Arata, Ao Fukai accidentally takes a bracelet being smuggled by Gazelle, Pippo, and Han Juno, and a Scub Coral suddenly appears, along with a G-Monster. Gazelle and his friends were smuggling the item to the Japanese Armed Forces, but they discover the bracelet is missing and go to find Ao to try to retrieve it. In the interrim, another Scub Coral and G-Monster appears, as Cristophe Blanc of Generation Bleu makes a deal with the Union of the Okinawa Islands government to take care of the new G-Monster. Ao soon realizes that the bracelet is one owned by his mother years ago, just as Gazelle goes to take it back.

The G-Monster continues its attack on Iwato Jima, and with Gazelle's help Ao pilots an IFO being transported by the Japanese Navy and uses it to defeat the G-Monster, his hair changing color to turquise in the battle, all while Team Pied Piper pilots watch, realizing that the IFO is the first ever model made.

With renewed resolve to protect Iwato Jima, Ao takes on the G-Monster with some help. And in the aftermath, Ao begins to learn that the world is more complex than he realized. In hopes of finding his mother and learn more about his birth, Ao decides to join Generation Bleu.

The Japanese government runs an experiment on Tokyo Bay trying to create its own Plant Coral. However, a Secret appears and starts wreaking havoc. Team Pied Piper is dispatched to the area, but when Ao is informed that protecting the city from the Secret is not their top priority, he leaves against orders to engage it.