25 years after Éclair and Lumière used their powers to stop the explosion of a planet, cadet partners Ascoeur and Q-feuille are working in the cafe of the Galactic Trade Organization’s main office on the planet Aineias. Ascoeur is a bit over-eager, naive, and clumsy while Q-feuille is the level-headed, yet hypersensitive one. On this particular day, Ascoeur gets into an argument with her manager over her wearing bloomers, and Ascoeur inadvertently takes them off right in front of GTO Chief Hiver.

After having gotten herself incredibly worked up over some pudding, Ascoeur finally gets her chance to eat it. Unfortunately, Q-feuille sneezes and causes a chain reaction that leads to the pudding spilling all over the floor. Determined to get some pudding, Ascoeur decides to raid the cafe kitchen, but to get there during the after-hours, she and Q-feuille have to overcome the security system upgrades that Tweedledee made. Q-feuille’s expertise and memory helps them get through most of the traps, but they are eventually faced with an army of Tweedledee dolls that soon overwhelm them. Q-feuille sacrifices herself so that Ascoeur can go ahead, but Ascoeur ends up tripping and falling into another trap. By the time the girls finally reach the kitchen, it’s already daytime, and the puddings have all been consumed.

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当艾克蕾尔和琉美艾尔击退袭击GOTT总部的恐怖分子后，她们接下来的任务是护送督察员阿姆布拉斯多，到梅地亚行星去调节法乌奴斯行星之间因为经济摩擦而产生的纠纷。然而法乌奴斯军方的宇宙舰队，却已经强行开始对梅地亚行星进行经济封锁

ES成员中的亚路薇和罗薇路可在任务中扣押自犯罪组织的重力控制物资“HI--G”在运回GOTT总部时却突然失踪。艾克蕾尔和琉美艾尔奉命协助追查此事，但是等着他们的去是危险的重力炸弹陷阱，及督察员阿姆布拉斯多的被反和出卖。

在银河边境区域的可陆斯星系，重大的经济诈骗犯德克?汗终于被艾克蕾尔和琉美艾尔逮捕。可是她们两人在与可陆斯星警方代表一个顽固的孟司部共同押送犯人到GOTT总部时却遇到了“保险屋”的攻击。

非法的战斗改造人在进行着底下交易，艾克蕾尔为了追查被盗走的机密零件潜入了未登记的克柏斯太空站。并假扮成改造人摔角选手上擂台挑战，但在真实的身份被识破之际，她却成了太空站所有改造人的一号目标。

今天是难得的假日，两个人都各自安排好了自己的休假计划，艾克蕾尔在同事的邀请下前往高级餐厅吃饭，没想到却卷入了情报贩子的交易场所，另一方面，去欣赏歌剧的琉美艾尔也莫名其妙的卷入了绑架案。

在繁荣的通商贸易行星—沙德洛斯星上，运送旅客离开轨道电梯的往返车里频繁的发生盗窃案件。艾克蕾尔奉命隐藏自己的身份。与SO成员的帕多西卡太太一起执行任务，后来发现原来是“内鬼”作祟。

13岁的少年狄姆因为父亲过失而竭诚了财团总裁的位置，可是继承的条件是在指定的时间内到达某特定地点所接受基因坚定检查接下本次特别任务的艾克蕾尔和琉美艾尔是否能够化险为夷，安全的将他送答目的地？

艾克蕾尔等人受命调查行星破坏武器“地表解裂弹”的地下贩卖管道，却在调查的过程中与其他也接到认为的ES成员巧遇，即使她们对于艾克莉斯局长的举动感到疑惑，但仍持续追查着地表解裂弹的行踪。

艾克蕾尔为了追查经济界大人物始终的案子而潜入了达达努斯行星，但是不关怎么追查获得的证词都是灭有这个人的存在。到底这件事背后隐藏的、企图颠覆全行星的阴谋呢？

艾克蕾尔受到事件的影响产生了严重的幻觉闪现现象，当她持续的与意志中的另一个自己对峙时，她发现了反复舍弃性命一般的战斗，并被火焰所包围着。

Eclipse sends Eclair and Lumiere to help the Nobles quell a peasant revolt. At a demonstration, the Nobles kill some of the protestors! Outraged, Eclair and Lumiere defy their orders and attack the Noble's army. As a result, they're erased from the GOTT files and declared fugitives!

因为违反了ＧＯＴＴ的命令，而被总部下令整肃的艾克蕾尔和琉美艾尔两人变成了逃亡者，艾克蕾尔和琉美艾尔与负责追捕的部队发生了对峙，在彼此的心中背负着个自不用的想法。

在潜逃到废弃宇宙殖民地的两人面前出现的追兵竟然是过去与他们战斗过的的对手牛王与阿王！为了拯救在作战中受伤的琉美艾尔，艾克蕾尔唯一能依靠的就是过去的一个约定。

艾克蕾尔和琉美艾尔降临在正在进行着行星地球化的星球上，然而，因为ＧＯＴＴ的抹杀命令而不得不执行行动的特威德鲁蒂姐弟，居然使用了残酷的特殊程序，让她们遇到了最辣手的敌人的攻击。

在停止逃亡并回头攻击ＧＯＴＴ总部的艾克蕾尔和琉美艾尔面前剩下的ＥＳ成云门终于出面迎击了！就在逐渐崩溃的总部大楼内，与过去的伙伴们各自使尽全力展开对决，在这场战争结束时他们的结果会怎么样呢？

在失去了过往的记忆后惊醒的艾克蕾尔身边，琉美艾尔正细心的照料着她。而与围绕在她们身边人们间相遇故事，渐渐边的只能在追忆中描绘了，另一方面，阿姆布拉斯多正在向上级汇报至今位置特殊任务中所隐藏的秘密。

就任代理局长的艾克蕾尔开始进行ＧＯＴＴ重建工作，两兄弟德克斯铁拉和希尼斯特拉被任命新ＥＳ成员的“教育”任务。然而这１２个新人的能力却让他们两人感到意外，并觉得事情有点不对劲。

因为神秘的搅局者让艾克蕾尔的宣言发表现场在混乱的局面中草草结束。而在这场骚动中阿姆布拉斯多推荐自己当新ＥＳ成员的监督官。之后还对她们手起了自己曾经看护过女孩们的故事。

拿掉面具的艾克蕾尔和琉美艾尔终于和印发ＧＯＴＴ崩溃的敌人面对交锋了，当艾克蕾尔和琉美艾尔等人在敌人惊人的能力追赶下陷入了绝境时，出面搭救却是个另人万万想不到的任人物。

艾克蕾尔她们重新任职于重建后的ＧＯＴＴ和以前一样的工作，可以看出他们已经逐渐恢复了过去的生活方式，然而，琉美艾尔的特殊能力却让她负荷了过量的记忆情报，这逐渐对她的身体造成了致命的伤害。

“顶天巨神型岛宇宙间航行宇宙船—杜卡利翁”就要开始举行进宙仪式了，正当艾克蕾尔等人获知巨型战舰——杜卡利翁背后所隐藏的秘密时，负责监视工作的特威德鲁蒂姐弟眼前却出现了异常的情况。

ＧＯＴＴ长官休巴力耶?德特立修突然擅自启动了杜卡利翁引发震动银河的巨大事件。之后艾克蕾尔纵终于追悼了出现在伊尼斯星轨道上的杜卡利翁究竟艾克蕾尔与休巴力耶?德特立修之间有着什么样的关系呢？

由于亚路微与巨大宇宙战舰杜卡利翁融合为一体，全银河人类同时面临了最大的危机！而在杜卡利翁空间站跳跃之后出现的起始星地球外侧，这是艾克蕾尔等人正在被分解成粒子。

虽然ＧＯＴＴ全体成员集体出动合力对抗亚路微与巨大宇宙战舰杜卡利翁融合为一体，但在杜卡利翁压倒性绝对的力量前毫无效果，就在艾克蕾尔等人正面临生死之际，说出亚路微的弱点的竟然是他的母亲。