Los criptozoólogos de la agencia Monarch se enfrentan a un grupo de enormes monstruos: Godzilla, Mothra, Rodan y el enemigo de la humanidad, King Ghidorah. Estas antiguas criaturas harán todo lo posible por sobrevivir, poniendo en riesgo la existencia del ser humano en el planeta.

A 17th-century Caribbean port rumored to have frequented by pirates rises from the ocean floor, where it came to rest after an earthquake many years before. A scientist wants to study it, some thugs want the treasure alleged to be stored there, a bunch of mutated giant crabs living there attack them all.