2041년. 정신에너지를 부정하는 물질주의 사회가 된 도쿄. 국가보안본부에 소속된 쿠로키 타쿠야·유우야 형제는, 능력자를 속이는 미라클 믹 체포의 임무중에 수수께끼의 소녀와 조우한다.반면 초능력 때문에 연구소에 격리돼 있어야 할 키리하라 나오야 형제는 깨어나자 왠지 숲속에 있었다.

보안대에 의한 체포를 면한 미라클 믹은 한 다이너에서 한 여자를 만나고 있었다. 그 정보를 입수한 쿠로키 형제들 보안대는, 믹의 신병을 확보하기 위해 다이너를 포위한다. 그러나, 거기에는 미쿠리야의 연구소로부터 해방된 능력자·키리하라 형제가 있었는데...

The SWE team gets its first mission: tracking down series of bizarre suicides at a school. But things go wrong when they find out they're just as vulnerable to mind-control as the victims themselves!

Naoya is wounded after their encounter with SWE, but the brothers find help from an unexpected source: a group of rebels fighting to bring back free speech and thought to Japan.

With Naoya taken hostage, Naoto is forced into a risky and dangerous raid on a local television station. When the raid goes wrong, both he and Naoya are forced to fend for their lives.

The truth about Naoto and Naoya's past, and what happened in the mysterious World War III, is revealed at a strange facility that lies between two worlds...

Yuya and Takuya meet a mysterious prophet who is commanding the SWE from the shadows.

A climactic showdown with the strange woman behind the SWE shows there's more to the story than meets the eye.

As secrets are revealed in the far land of Russia, Special Weapons Enforcement makes a deal with the government to bury everyone involved in a deadly bombing raid.

As the world stands on the brink of annihilation, the connection between the brothers is revealed.

Finally, as Okuhara predicted, the world has begun to disappear. Security captain Honda tries to erase the Kirihara and Kuroki brothers in order to protect the present world. However, Honda's power cannot stop the flow. Okuhara, who had the idea, entrusts the future to two brothers. Naoto and Naoya, Takuya and Yuya who were entrusted with everything-