The Allied Shinobi Forces are on the verge of winning the war when Madara Uchiha appears. Madara summons the giant Gedo Statue and unleashes its devastating power.

Naruto and Killer Bee rush to the battlefield when Nine Tails suddenly speaks to Naruto inside his mind. The Nine Tails questions Naruto’s intent to end the hatred in the world and reminds him of how he was unable to save Sasuke.

Over at the Medical Unit camp, Sakura and the other medic ninja work nonstop to treat the wounded. Neji is there to recover from overusing his Byakugan.

Kiba, Shino, and Hinata are sent to investigate an area where the Akatsuki are supposedly getting through. There, the three are ambushed by a White Zetsu and get separated.

As the Allied Shinobi Forces' headquarters scramble to deal with White Zetsu Army clones infiltration issue, word reaches the Fifth Division of the development and Mifune instructs his division accordingly.

Konohamaru participates in a meeting organized by Ebisu in Konoha of the remaining villagers, mostly including the children and wives. Ebisu attempts to rally everyones' spirits together in the event that rogue ninja should attack the village while their shinobi families are away at war, but the mothers scoff and claim that they will protect the village as they always have while their husbands fought. Suddenly Konohamaru is approached by several children, each claiming to have seen terrifying rogue ninja roaming the east and west forests outside Konoha. He tries to recruit his classmates into hunting them down, but they refuse to beleive him. Konohamaru investigates the area alone with Moegi and Udon, only to find a traveling circus troupe in the forest instead of rogue ninja. Heading back, Konohamaru is again alerted that people are attacking the village on the west side, and this time, the rumors are true...

Tsunade and the Raikage arrive to prevent Naruto and Killer Bee from joining the battle. But the two Kage fail to convince the Jinchuriki to turn back, forcing the Raikage to use extreme force.

Fourth Raikage Ay attacks Naruto in an attempt to prevent the Jinchuriki from falling into Madara’s hands. Ay is unwilling to listen to either Tsunade or Killer Bee’s pleas to change his mind.

Kakashi assigns Sai to take over for the Sealing Corps, who are recovering from sealing the reanimated shinobi. But Sai is not sure if he can handle the responsibility. Soon afterwards, the Third Company is attacked by Jinin Akebino.

A group of Allied Shinobi, including Omoi and Maki of the Sand, battle against several reanimated enemies. Maki recognizes one of them as Pakura, her former master who was a Sand Village hero.

Still coping with the loss of her loved ones, Tsunade indulges in gambling and drinking. Around the same time, the Raikage Ay and his men are on a mission to steal a scroll from a certain village.

The Raikage Ay and his team suffer critical injuries during an enemy attack. Unwilling to sacrifice any more of his men, Ay seeks medical help from Tsunade, who just happens to be in the area.

Kakashi races to the scene where the Seven Ninja Swordsmen Kushimaru Kuriarare and Jinpachi Munashi were last sighted. Enraged by the carnage they’ve left behind, Kakashi teams up with Might Guy.

As Guy and Kakashi prepare to regroup their forces, they receive word that one of the units were engaged in battle with Ameyuri Ringo and decide to head to that location.

Taking place in the aftermath of the Kage Summit, Team Kakashi is sent out on a mission by Tsunade to a location known as "The Hole" to investigate an incident where its people were killed.

The reborn Team Kakashi continues to investigate the recent attack by Kabuto and the reincarnated shinobi when Naruto gets swallowed by a giant snake, but manages to escape using shadow clones, and accidentally ingests snakes that were present in the pond which Kabuto uses to summon Hidan.

The Nine-Tailed Naruto clone tries to attack Dokku and the orphans, when Might Guy and Rock Lee arrive to repel it.

While the Saezuri is revealed, learning that Disonasu employed Kabuto Yakushi to wipe out the residents of Tonika Village, Dokku tried to attack Disonasu, but stopped by a reincarnated puppet and restrained by a resurrected Takigakure shinobi.

The legendary Ama no Hoko imbues the Nine Tails’ clone with enough power to destroy the world. Naruto is overcome by its immense power and lies unconscious.